SNP Profiles matching TSH 516

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 Key

 1234567891011121314
_Input profile
CGATACGGCTACCGAACTAAAGAGACCT
1._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
2._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
3._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
4._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
5._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
6._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
7._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
8._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
9._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
10._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
11._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
12._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
13._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
14._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
15._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
16._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
17._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
18._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
19._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
20._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
21._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
22._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
23._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
24._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
25._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
26._TSH_516
CGATACGG_ACCGAACTAAAGAGACCT
27._GC-08-208-6-04
CGATACGG_ACCGAACTAAAGAGACCT
28._RUQ_1018
CGATACGGCTACCGAACTAAAGAGACCT
29._RUQ_1018
__ACGGCTACCGAACTAA_AGACCT
30._GC-01-002-1-02
CGATACGTCTACCCAACCAAAGAGACCT
31._GC-01-002-1-02
CGATACGTCTACCCAACCAAAGAGACCT
32._GC-01-002-1-02
CGATACGTCTACCCAACCAAAGAGACCT
33._EET_45_[ECU]
CGATACGT_ACCCAACCAAAGAGACCT
34._GC-03-017-2-06
CGATACGT_ACCCAACCAAAGAGACCT
35._RUQ_321
CGAAAAGTCTACCGAGCTAAAGAGACCT
 1516171819202122232425262728
_Input profile
GTCGACTTAGGTCGCTCTCGATCTAGCT
1._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
2._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
3._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
4._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
5._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
6._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
7._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
8._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
9._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
10._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
11._TSH_516
GTCGACTTAGGTCGCTCTCGATCTAGCT
12._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
13._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
14._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
15._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
16._GC-08-208-6-04
GTCGACTTAGGTCGCTCTCGATCTAGCT
17._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
18._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
19._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
20._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
21._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
22._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
23._GC-08-209-6-05
GTCGACTTAGGTCGCTCTCGATCTAGCT
24._TSH_516
GTCGAC_AGGTCGCTCTCGATCTAGCT
25._GC-08-208-6-04
GTCGAC_AGGTCGCTCTCGATCTAGCT
26._TSH_516
GTCG_TT_GTCG_CTCGATCTAGCT
27._GC-08-208-6-04
GTCG_TT_GTCG_CTCGATCTAGCT
28._RUQ_1018
GTCGACTTGGGTCGCTCTCGATCTAGCT
29._RUQ_1018
GTGGACTT_GTCG-____AGCT
30._GC-01-002-1-02
GTGGACTTAGGGCGCTCTCGATCTAGCT
31._GC-01-002-1-02
GTGGACTTAGGGCGCTCTCGATCTAGCT
32._GC-01-002-1-02
GTGGACTTAGGGCGCTCTCGATCTAGCT
33._EET_45_[ECU]
GTGGACTTAGGGCGCTCTCGATCTAGCT
34._GC-03-017-2-06
GTGGACTTAGGGCGCTCTCGATCTAGCT
35._RUQ_321
GTCGCCTTGGGGCCCTCTCGATCTAGCT
 293031323334353637383940  
_Input profile
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
1._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
2._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
3._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
4._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
5._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
6._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
7._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
8._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
9._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
10._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
11._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
12._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
13._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
14._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
15._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
16._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
17._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
18._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
19._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
20._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
21._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
22._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
23._GC-08-209-6-05
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
24._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
25._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
26._TSH_516
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
27._GC-08-208-6-04
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
28._RUQ_1018
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
29._RUQ_1018
____GT___CTCGAG_X_XX_X
30._GC-01-002-1-02
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
31._GC-01-002-1-02
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
32._GC-01-002-1-02
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
33._EET_45_[ECU]
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
34._GC-03-017-2-06
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
35._RUQ_321
AGATCTCTGTCTACCTCTCGAGCTX_XX_X

Input profile: TSH_516

 
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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

1._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

3._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

4._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

5._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

6._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

7._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

8._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

9._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

10._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

11._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

12._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

15._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

22._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

25._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

26._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

27._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._TSH_516 RUQ_1018

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._TSH_516 RUQ_1018

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._VB_/REGINA GC-01-002-1-02

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

31._VB_/REGINA GC-01-002-1-02

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

32._VB_/REGINA GC-01-002-1-02

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

33._EET_45_[ECU]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

34._EET_45_[ECU] GC-03-017-2-06

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

35._ICS_70 RUQ_321

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520